Software


 * [|obe.SNP] || The tool obe.SNP can be used for the extraction genomic information relevant to obesity. ||
 * [|Compota] || Release of Compota - a library for building and execution bioinformatics pipelines. ||
 * [|Statika] || Statika is set of Scala libraries, which allows you to declare dependencies between components of any modular system and track their correctness. ||
 * [|Metapasta] || Metapasta is a scalable tool for bacterial community profiling based on the analysis of 16S metagenomics data. ||
 * [|SEL-GSEA] || SEL-GSEA is is a python tool that performs a Gene Enrichment Analysis (GEA) and a Gene Set Enrichment Analysis (GSEA). ||
 * [|Bio4j] || Bio4j provides a completely new and powerful framework for protein related information querying and management. ||
 * [|aws-scala-tools] || The toolbox aws-scala-tools is the part of statika project providing a Scala wrapper for AWS Java SDK ||
 * [|Nispero] || Nispero is a cloud-computing based Scala tool specially suited for bioinformatics data processing. ||
 * [|miRcounts] || miRcounts is a Biopython script which will take raw small RNA reads in fastq format and output counts of the known miRNA sequences. ||
 * [|Mixed ploidy tools] || This repository contains tools for the genotyping of a mixed ploidy data set (including polyploids). They were developed [|for this paper.] ||
 * [|WGD pipeline] || A pipeline composed of Perl scripts for investigating historic Whole Genome Duplications (WGD) in a genome. ||
 * [|PERGOLA] || PERGOLA is an R package for linkage mapping in polyploids. ||
 * [|GLM of clines] || This repository contains a collection of R scripts to carry implement generalised linear models to analyse clines. ||
 * [|MarkerDev] || MarkerDev is a workflow to develop genetic markers for the analysis of geographic differentiation starting from transcriptomic data. ||
 * [|MarkerDev stats] || This repository contains R scripts to analyse the data produced by implementing MarkerDev. ||
 * [|VirEst] || VirEst is a pipline for analyzing viral genetic data. It is based on the eHive: aworkflow management system developed at EBI. ||
 * [|Ash genome] || The Ash genome. A resource for researchers investigating the spread of the invasive disease 'ash dieback'. ||