Recent Changes

Tuesday, May 9

  1. page Where we are now edited ... Graduated PhD student Europe 2016 Ongoing collaborations on bluebell project with Royal B…
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    Graduated
    PhD student
    Europe
    2016
    Ongoing collaborations on bluebell project with Royal Botanical Garden Edinburgh
    Berlin
    May 2017
    Phylogentics and species concepts of Cactaceae

    Soumya Ranganathan--
    TBD
    (view changes)

Monday, April 24

  1. page Where we are now edited ... Bioinformatics Jeannine Marquardt TBD Graduated PhD student Europe ... Plant breeding…
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    Bioinformatics
    Jeannine Marquardt
    TBDGraduated
    PhD student
    Europe
    ...
    Plant breeding and bioinformatics
    Lizzy Sollars
    TBDGraduated
    Clinical Bioinformatician
    Sheffield Hospital
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    Cancer Evolutionary Genomics and Modelling
    Jasmin Zohren
    TBDGraduated
    PostDoc
    The Francis Crick Institute
    (view changes)
    11:59 pm
  2. page Where we are now edited ... Bioinformatic aspects of plant breeding Andrea Hatlen TBD Graduated PostDoc University …
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    Bioinformatic aspects of plant breeding
    Andrea Hatlen
    TBDGraduated
    PostDoc
    University of Essex
    ...
    Habib Jan
    Graduated
    Recently returned
    Pakistan
    Assistant Professor
    Shaheed Benazir Bhutto University

    May 2016
    Agricultural Genetics
    (view changes)
    11:56 pm

Monday, April 3

  1. page Vedran Bozicevic edited ... I presented the results of my PhD project at the PopGroup47 conference in Bath, UK (7-10 Janua…
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    I presented the results of my PhD project at the PopGroup47 conference in Bath, UK (7-10 January, 2014), and at the Plant and Animal Genome XXIV conference in San Diego, US (8-13 January, 2016):
    {Poster_Bozicevic_PopGroup47.pdf}
    In{When_Winter_is_Coming.pdf}
    In
    short, I havefirst analyzed SNPs
    ...
    populations. I have found that
    ...
    complex traits. Later, I used Bayenv2 on SNPs across the genome to correlate the allele frequencies at those SNPs with various environmental variables.
    The results showed a high likelihood of selection for cold tolerance-related genes in European environments. These results have been published in the journal Molecular Ecology, titled "Population genetic evidence for cold adaptation in European //Drosophila melanogaster// populations". The final chapter of my thesis deals with as yet unpublished data on selection for cold tolerance also working on the gene network level, i.e. groups of genes defined as gene ontology terms and metabolic pathways. I submitted my thesis on 20 February 2017.
    Most recently, I co-authored a paper in the journal BMC Evolutionary Biology analyzing genetic footprints of balancing selection in Drosophila melanogaster, titled "A genome-wide scan for genes under balancing selection in //Drosophila melanogaster//".

    (view changes)
  2. page Vedran Bozicevic edited ... I have a Diploma/MSc in Biology from the Faculty of Science at the University of Zagreb, Croat…
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    I have a Diploma/MSc in Biology from the Faculty of Science at the University of Zagreb, Croatia. Before taking up the PhD position at the University of Munich, I spent 2 years doing research in evolutionary genetics at the Ruđer Bošković Institute (IRB), Croatia's largest public research institute.
    My courses at the University included topics from Ecology, Evolutionary Biology, Animal and Plant Systematics, Biogeography, Genetics, and Molecular Biology. In my post-Diploma research I was involved in various topics bordering Evolutionary Genomics, Bioinformatics, Population Genetics and Genomic Phylostratigraphy, an Evo-Devo-like approach to the reconstruction of the macroevolutionary history of various animal organ systems. A research paper dealing with some of my research at IRB was recently published in the journal Frontiers in Zoology, titled "Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems".
    Most recently, I haveI presented the
    ...
    of my currentPhD project at
    ...
    (7-10 January, 2014): {Poster_Bozicevic_PopGroup47.pdf}2014), and at the Plant and Animal Genome XXIV conference in San Diego, US (8-13 January, 2016):
    {Poster_Bozicevic_PopGroup47.pdf}

    In short, I have analyzed SNPs associated to three complex traits (chill-coma recovery time, starvation resistance, and startle response) in Drosophila melanogaster, using next-gen sequence data from one African and three European populations. I have found that the mean pairwise FST of these SNPs is significantly higher than that of the genomic background, suggesting a role of selection in shaping these complex traits.
    (view changes)

Sunday, March 12

  1. page Where we are now edited ... Population genetics Fabian Grandke TBD Researcher Graduated PostDoc University of Gies…
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    Population genetics
    Fabian Grandke
    TBD
    Researcher
    Graduated
    PostDoc

    University of Giessen
    December 2015
    (view changes)
    6:38 am

Thursday, January 5

  1. page Publications edited ... Grandke F, Ranganathan S, Czech A, de Haan JR, Metzler D (2014), "Bioinformatic Tools for…
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    Grandke F, Ranganathan S, Czech A, de Haan JR, Metzler D (2014), "Bioinformatic Tools for Polyploid Crops", Journal of Agricultural Science and Technology B, Volume 4, Number 9, September 2014
    Grandke F, Singh P, Heuven HCM , de Haan JR and Metzler D (2016), "Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: A comparative study in hexaploid chrysanthemum", BMC Genomics, 17:627
    ...
    Metzler D (2016),(2017), "PERGOLA: Fast
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    Polyploids", BMC Bioinformatics (in press)Bioinformatics, 18:12
    Grandke F,
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    rearrangement calling", Bioinformatics (in press)Bioinformatics, btw648
    AndreaHatlen, Andrea
    Publications:
    (view changes)
    5:04 am

Sunday, January 1

  1. page Where we are now edited ... Software engineering Om Kulkarni Defending Dec 2016 Graduated PhD student Grenoble
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    Software engineering
    Om Kulkarni
    Defending Dec 2016Graduated
    PhD student
    Grenoble
    (view changes)
    11:03 am

Thursday, December 8

  1. page Publications edited ... Grandke F, Ranganathan S, Czech A, de Haan JR, Metzler D (2014), "Bioinformatic Tools for…
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    Grandke F, Ranganathan S, Czech A, de Haan JR, Metzler D (2014), "Bioinformatic Tools for Polyploid Crops", Journal of Agricultural Science and Technology B, Volume 4, Number 9, September 2014
    Grandke F, Singh P, Heuven HCM , de Haan JR and Metzler D (2016), "Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: A comparative study in hexaploid chrysanthemum", BMC Genomics, 17:627
    ...
    BMC Bioinformatics (accepted)(in press)
    Grandke F, Snowdon R, Samans B (2016), "gsrc - an R package for genome structure rearrangement calling", Bioinformatics (in press)

    AndreaHatlen, Andrea
    Publications:
    (view changes)
    3:09 pm

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